Welcome!

Enter a player name to begin or load your saved progress.

Enzyme Wiki2Web Clarity Challenge

Study Hints Create Teach
Global Score: 0
Trophies: 0 🏆

‹ Back

Score: 0 / 100

Study Guide: Enzymes: Biological Catalysis, Regulation, and Applications

Cheat Sheet:
Enzymes: Biological Catalysis, Regulation, and Applications Study Guide

Enzyme Fundamentals and Structure

Enzymes are exclusively protein-based catalysts, with no other biological molecules capable of accelerating chemical reactions in living systems.

Answer: False

Explanation: While most enzymes are proteins, catalytic RNA molecules (ribozymes) and biomolecular condensates are also recognized as biological catalysts capable of accelerating reactions in living systems.

Return to Game

Enzymes are characterized by their high specificity and sensitivity to environmental factors such as temperature and pH, and they are regenerated at the end of each catalytic cycle.

Answer: True

Explanation: Enzymes exhibit high specificity and are sensitive to environmental conditions like temperature and pH. A key characteristic of catalysts, including enzymes, is that they are regenerated unchanged at the conclusion of the reaction.

Return to Game

Exposure to extreme temperatures or pH levels can cause an enzyme to denature, leading to a loss of its specific three-dimensional structure and catalytic function.

Answer: True

Explanation: Extreme conditions, such as non-optimal temperatures or pH, can cause an enzyme to denature, resulting in the loss of its unique three-dimensional structure and, consequently, its catalytic activity.

Return to Game

Isozymes are different enzymes that catalyze the same chemical reaction but may have different amino acid sequences or structures.

Answer: True

Explanation: Isozymes are indeed distinct enzymes that catalyze the same reaction but can differ in their amino acid sequences or overall structures.

Return to Game

The active site of an enzyme is a large region comprising most of the enzyme's overall structure, directly involved in both binding and catalysis.

Answer: False

Explanation: The active site is a specific, typically small region of an enzyme, often involving only 2-4 amino acids, that is directly involved in catalysis and substrate binding, not most of the enzyme's overall structure.

Return to Game

Enzymes like kinases and phosphatases are involved in signal transduction and cell regulation, while ATPases contribute to movement and transport within cells.

Answer: True

Explanation: Kinases and phosphatases are indeed crucial for signal transduction and cell regulation, and ATPases are involved in cellular movement and transport, as described in the diverse functions of enzymes.

Return to Game

What is the fundamental definition of an enzyme and its primary role in biological systems?

Answer: An enzyme is a protein that functions as a biological catalyst, accelerating chemical reactions without being consumed.

Return to Game

What happens to an enzyme's function if it is exposed to conditions outside its optimal range, such as extreme pH?

Answer: It undergoes denaturation, losing its specific three-dimensional structure and catalytic function.

Return to Game

What is the 'active site' of an enzyme primarily composed of?

Answer: A specific region with a catalytic site and one or more binding sites.

Return to Game

Historical Context and Classification

Anselme Payen, a French chemist, was the first to discover an enzyme in 1833, which he named 'zymase'.

Answer: False

Explanation: Anselme Payen discovered the first enzyme in 1833, naming it 'diastase'. Eduard Buchner later discovered 'zymase' in 1897.

Return to Game

Louis Pasteur initially believed that fermentation was a 'vital force' that could only occur within living yeast cells, a theory later disproven by Eduard Buchner.

Answer: True

Explanation: Louis Pasteur's 'vital force' theory, which posited that fermentation required living cells, was indeed disproven by Eduard Buchner's demonstration of cell-free fermentation.

Return to Game

The term 'enzyme' was coined by Wilhelm Kühne in 1877, deriving from a Greek word meaning 'leavened' or 'in yeast'.

Answer: True

Explanation: Wilhelm Kühne coined the term 'enzyme' in 1877, drawing from the Greek 'énzymon,' which means 'leavened' or 'in yeast,' reflecting its historical association with fermentation.

Return to Game

James B. Sumner, John Howard Northrop, and Wendell Meredith Stanley jointly received the Nobel Prize for proving that enzymes are pure carbohydrates.

Answer: False

Explanation: James B. Sumner, John Howard Northrop, and Wendell Meredith Stanley received the Nobel Prize for definitively proving that enzymes are pure proteins, not carbohydrates.

Return to Game

The atomic-level structure of enzymes was first determined for lysozyme in 1965 using X-ray crystallography, initiating the field of structural biology.

Answer: True

Explanation: The first atomic-level structure of an enzyme, lysozyme, was indeed determined in 1965 using X-ray crystallography, a milestone that launched the field of structural biology.

Return to Game

Enzymes are classified by the International Union of Biochemistry and Molecular Biology (IUBMB) primarily based on their amino acid sequence similarity.

Answer: False

Explanation: The IUBMB classifies enzymes primarily based on their reaction mechanism using EC numbers, not primarily on amino acid sequence similarity, although sequence similarity is another criterion for classification.

Return to Game

The EC number system's first digit broadly classifies enzymes based on their evolutionary relationship.

Answer: False

Explanation: The EC number system's first digit classifies enzymes based on their reaction mechanism, not their evolutionary relationship. EC categories do not necessarily reflect sequence similarity.

Return to Game

Which historical observation preceded the formal discovery of enzymes?

Answer: The digestion of meat by stomach secretions.

Return to Game

Who was the first person to discover an enzyme and what did they name it?

Answer: Anselme Payen, who named it 'diastase'.

Return to Game

What was Louis Pasteur's initial conclusion regarding fermentation?

Answer: Fermentation was a 'vital force' that could only occur within living yeast cells.

Return to Game

Eduard Buchner received the Nobel Prize in Chemistry for which discovery?

Answer: Discovering cell-free fermentation.

Return to Game

Following Buchner's example, how are enzymes typically named?

Answer: By adding the suffix '-ase' to the name of their substrate or the reaction type.

Return to Game

Who definitively proved that enzymes are pure proteins?

Answer: James B. Sumner, John Howard Northrop, and Wendell Meredith Stanley.

Return to Game

What method was first used to determine the atomic-level structure of enzymes?

Answer: X-ray crystallography

Return to Game

What are the two primary criteria used to classify enzymes?

Answer: Their amino acid sequence similarity or their enzymatic activity.

Return to Game

According to the EC number system, which class of enzymes catalyzes oxidation/reduction reactions?

Answer: EC 1, Oxidoreductases

Return to Game

Catalytic Mechanisms and Kinetics

The primary role of an enzyme is to significantly increase the activation energy of a chemical reaction, thereby speeding up the process.

Answer: False

Explanation: Enzymes accelerate chemical reactions by significantly lowering the activation energy, not increasing it.

Return to Game

The 'lock and key' model, proposed by Daniel Koshland, suggests that enzymes are flexible structures that reshape upon substrate binding.

Answer: False

Explanation: The 'lock and key' model was proposed by Emil Fischer and describes rigid enzyme-substrate fitting. The 'induced fit' model, proposed by Daniel Koshland, describes flexible enzyme structures that reshape upon substrate binding.

Return to Game

Enzymes accelerate reactions by increasing the entropy change and forming higher-energy covalent intermediates with the substrate.

Answer: False

Explanation: Enzymes accelerate reactions by reducing unfavorable entropy changes and forming lower-energy covalent intermediates, not higher-energy ones.

Return to Game

Enzyme dynamics refers to the internal motions of an enzyme's structure, which can involve movements of individual amino acid residues or entire protein domains, and are linked to functional aspects.

Answer: True

Explanation: Enzyme dynamics indeed describes the complex internal motions within an enzyme's structure, from individual residues to entire domains, and these motions are intrinsically linked to the enzyme's functional characteristics.

Return to Game

Cofactors are always inorganic molecules, such as metal ions, that enzymes require for full activity.

Answer: False

Explanation: Cofactors can be inorganic molecules like metal ions, but they can also be organic compounds, such as flavin and heme.

Return to Game

Coenzymes are organic cofactors that are tightly, often covalently, bound to an enzyme and remain associated with it throughout the catalytic cycle.

Answer: False

Explanation: Coenzymes are organic cofactors that are typically released from the enzyme and transport chemical groups. Prosthetic groups are the organic cofactors that are tightly, often covalently, bound.

Return to Game

A holoenzyme is an inactive enzyme that requires a cofactor but does not currently have one bound.

Answer: False

Explanation: A holoenzyme is the active, complete form of an enzyme with its cofactor(s) bound. An apoenzyme is the inactive form lacking its cofactor.

Return to Game

Many coenzymes are derived from vitamins, which are essential organic compounds that the body can synthesize de novo.

Answer: False

Explanation: Many coenzymes are derived from vitamins, but vitamins are essential organic compounds that the body cannot synthesize de novo and must obtain from the diet.

Return to Game

Enzyme kinetics, which studies how enzymes bind to substrates and convert them into products, was quantitatively theorized by Leonor Michaelis and Maud Leonora Menten.

Answer: True

Explanation: Leonor Michaelis and Maud Leonora Menten indeed developed the foundational quantitative theory of enzyme kinetics, describing how enzymes interact with substrates and catalyze their conversion to products.

Return to Game

Vmax represents the substrate concentration required for an enzyme to reach half of its maximum reaction rate.

Answer: False

Explanation: Vmax represents the maximum reaction rate when the enzyme is saturated with substrate. Km (Michaelis-Menten constant) represents the substrate concentration required for an enzyme to reach half of its Vmax.

Return to Game

Catalytically perfect enzymes are those whose specificity constant is limited only by the rate at which the substrate diffuses to the enzyme.

Answer: True

Explanation: Catalytically perfect enzymes are characterized by a specificity constant that approaches the diffusion limit, meaning their reaction rate is solely limited by the rate of substrate diffusion to the active site.

Return to Game

How do enzymes primarily influence the rate of chemical reactions?

Answer: By lowering the reaction's activation energy.

Return to Game

Which model of enzyme-substrate binding suggests that enzymes are flexible structures that reshape upon interaction with the substrate?

Answer: The 'induced fit' model.

Return to Game

How do enzymes accelerate reactions at a molecular level?

Answer: By distorting bound substrates into their transition state form and orienting them productively.

Return to Game

What is 'substrate presentation' in the context of enzyme mechanism?

Answer: The spatial separation of an enzyme from its substrate, or its sequestration near the substrate to initiate activity.

Return to Game

What is the difference between coenzymes and prosthetic groups?

Answer: Coenzymes are released and transport groups, while prosthetic groups are tightly bound and remain associated.

Return to Game

What is an apoenzyme?

Answer: An enzyme that requires a cofactor but does not currently have one bound, rendering it inactive.

Return to Game

Many coenzymes are derived from which essential organic compounds?

Answer: Vitamins

Return to Game

What does Km (Michaelis-Menten constant) represent in enzyme kinetics?

Answer: The substrate concentration required for an enzyme to reach half of its Vmax.

Return to Game

What is a 'catalytically perfect' enzyme?

Answer: An enzyme whose activity is limited only by the rate of substrate diffusion to it.

Return to Game

Regulation of Enzyme Activity

Allosteric modulation involves molecules binding directly to the active site, causing a conformational change that either increases or decreases the enzyme's reaction rate.

Answer: False

Explanation: Allosteric modulation involves molecules binding to allosteric sites, which are distinct from the active site, to induce conformational changes that alter enzyme activity.

Return to Game

A competitive inhibitor binds to an enzyme at a site distinct from the active site, reducing catalytic efficiency without affecting substrate affinity.

Answer: False

Explanation: A competitive inhibitor binds directly to the active site. A non-competitive inhibitor binds to a site distinct from the active site.

Return to Game

Irreversible enzyme inhibitors permanently inactivate an enzyme, often by forming a strong covalent bond, and their effects cannot be reversed by increasing substrate concentration.

Answer: True

Explanation: Irreversible inhibitors form strong, often covalent, bonds with the enzyme, leading to permanent inactivation that cannot be overcome by increasing substrate concentration.

Return to Game

Enzyme inhibitors often function in organisms as part of a positive feedback mechanism, increasing the production of a metabolic pathway's end product.

Answer: False

Explanation: Enzyme inhibitors typically function as part of a negative feedback mechanism, where the end product inhibits an initial enzyme in the pathway, thereby decreasing production.

Return to Game

Pepsin, an enzyme active in the stomach, functions optimally at a neutral pH of 7.0.

Answer: False

Explanation: Pepsin functions optimally in highly acidic conditions, with an optimal pH range of 1.5–1.6, not a neutral pH of 7.0.

Return to Game

Enzyme activity in a cell is primarily controlled by only two mechanisms: regulation by activators/inhibitors and post-translational modification.

Answer: False

Explanation: Enzyme activity is controlled by five main mechanisms: regulation by activators/inhibitors, post-translational modification, control of enzyme quantity, subcellular distribution, and organ specialization.

Return to Game

Post-translational modifications like phosphorylation and polypeptide chain cleavage can alter enzyme activity, as seen with zymogens.

Answer: True

Explanation: Post-translational modifications, including phosphorylation and proteolytic cleavage (as in zymogen activation), are well-established mechanisms for altering enzyme activity.

Return to Game

The quantity of an enzyme is solely regulated by enzyme induction, which increases its production, without any mechanisms for decreasing its levels.

Answer: False

Explanation: The quantity of an enzyme is regulated not only by induction (increasing production) but also by repression (diminishing production) and by altering the rate of enzyme degradation.

Return to Game

Organ specialization in multicellular eukaryotes involves cells in different organs expressing distinct sets of isozymes to suit their specialized metabolic needs.

Answer: True

Explanation: Organ specialization involves the expression of distinct isozymes in different tissues, allowing cells to meet their unique metabolic demands.

Return to Game

How can the effect of a competitive inhibitor be overcome?

Answer: By increasing the substrate concentration.

Return to Game

Which type of inhibitor binds to an enzyme at a site distinct from the active site, reducing Vmax without affecting Km?

Answer: Non-competitive inhibitor

Return to Game

What defines an irreversible enzyme inhibitor?

Answer: It permanently inactivates an enzyme, typically by forming a strong covalent bond.

Return to Game

How do enzyme inhibitors function as part of feedback mechanisms in organisms?

Answer: They act as negative feedback, where the end product inhibits an initial enzyme in the pathway.

Return to Game

What is the optimal pH for pepsin, an enzyme active in the stomach?

Answer: 1.5–1.6

Return to Game

Which of the following is NOT one of the five main ways enzyme activity is controlled in a cell?

Answer: Alteration of enzyme's genetic code during activity

Return to Game

How does negative feedback regulate enzyme activity in metabolic pathways?

Answer: The end product of a pathway inhibits one of the initial enzymes.

Return to Game

Enzyme Evolution and Dysfunction

Defects in DNA repair enzymes can lead to cancer due to the accumulation of mutations in the genome.

Answer: True

Explanation: Defects in DNA repair enzymes impair a cell's ability to correct genetic errors, leading to an accumulation of mutations that can drive cancer development.

Return to Game

Enzymes evolve primarily through gene duplication followed by the complete redesign of the duplicate copies for entirely new functions.

Answer: False

Explanation: While gene duplication is a mechanism for enzyme evolution, it often involves small changes in substrate binding specificity or acquisition of novel activities, not necessarily a complete redesign for entirely new functions. Evolution can also occur without duplication.

Return to Game

Artificial evolution is used in vitro to modify enzyme activity or specificity for industrial applications, sometimes even designing enzymes from scratch.

Answer: True

Explanation: Artificial evolution is a key technique for engineering enzymes with desired properties for industrial use, including modifying existing activities or designing novel enzymes.

Return to Game

What is the consequence of defects in DNA repair enzymes?

Answer: Accumulation of mutations in the genome, potentially leading to cancer.

Return to Game

How do enzymes evolve over time?

Answer: Through mutations and sequence divergence, often involving gene duplication.

Return to Game

Industrial and Biotechnological Applications

In the biofuel industry, ligninases are used to break down cellulose into fermentable sugars for ethanol production.

Answer: False

Explanation: In the biofuel industry, cellulases are used to break down cellulose into fermentable sugars. Ligninases are used for the pretreatment of biomass.

Return to Game

Proteases, amylases, and lipases are commonly found in biological detergents to target protein, starch, and fat/oil stains, respectively.

Answer: True

Explanation: Biological detergents indeed utilize proteases for protein, amylases for starch, and lipases for fat/oil stains, leveraging their specific catalytic actions.

Return to Game

In the brewing industry, amyloglucosidase and pullulanases are used to increase the protein content of beer.

Answer: False

Explanation: Amyloglucosidase and pullulanases are used in brewing to create low-calorie beer and adjust fermentability by breaking down polysaccharides, not to increase protein content.

Return to Game

Papain, a proteolytic enzyme, is used in meat tenderizers to hydrolyze proteins, improving texture and digestibility.

Answer: True

Explanation: Papain is a well-known proteolytic enzyme used in meat tenderizers to hydrolyze proteins, which enhances the meat's texture and makes it more digestible.

Return to Game

Which enzymes are used in the biofuel industry to break down cellulose into fermentable sugars?

Answer: Cellulases

Return to Game

What is a culinary application of enzymes mentioned in the text?

Answer: Using papain as a meat tenderizer.

Return to Game

What is the role of rennin (chymosin) in the dairy industry?

Answer: To hydrolyze protein during cheese manufacturing.

Return to Game

Which enzymes are essential tools in molecular biology for techniques like PCR and restriction digestion?

Answer: Nucleases, DNA ligase, and polymerases

Return to Game

What is an application of proteases in personal care?

Answer: To remove proteins that accumulate on contact lenses.

Return to Game

What is the application of amylases in the starch industry?

Answer: To convert starch into glucose and various syrups.

Return to Game