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Gene Editing Unveiled

The Knockout Mouse Paradigm: A deep dive into the creation and application of genetically modified mice for understanding gene function and disease.

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What is a Knockout Mouse?

Targeted Gene Inactivation

A knockout mouse is a laboratory mouse (Mus musculus) in which a specific gene has been intentionally inactivated or disrupted. This is achieved by replacing the gene with an artificial piece of DNA, effectively "knocking out" its function.[1] These mice are invaluable animal models for investigating the roles of genes whose functions are not yet fully understood.

Inferring Gene Function

By observing the physiological or behavioral differences between a knockout mouse and a normal mouse, researchers can infer the probable function of the inactivated gene. This method is crucial for deciphering the complex genetic basis of biological processes and diseases.

Human Relevance

Mice are the laboratory animal species most closely related to humans for which the knockout technique can be readily applied. This makes them exceptionally useful for studying human physiology and diseases, as many genetic questions investigated in mice have direct relevance to human health.[2] Gene knockout in rats, for instance, is significantly more challenging and was only feasible from 2003 onwards.

Pioneering Research

The creation of the first recorded knockout mouse is credited to Mario R. Capecchi, Martin Evans, and Oliver Smithies. Their groundbreaking work in gene targeting earned them the 2007 Nobel Prize in Physiology or Medicine.[4] Aspects of this technology have since been patented globally.

Applications in Research

Unlocking Gene Secrets

The primary utility of knockout mice lies in their ability to reveal the function of specific genes. By observing the phenotypic consequences of gene inactivation, scientists can deduce the gene's normal role in the organism's development, physiology, and behavior.

Modeling Human Diseases

Knockout mice serve as critical models for a wide array of human conditions. They are instrumental in studying and modeling complex diseases such as various forms of cancer, obesity, cardiovascular diseases, diabetes, arthritis, substance abuse disorders, anxiety, and neurodegenerative conditions like Parkinson's disease.[3]

Developing Therapies

Beyond understanding disease mechanisms, these mice provide a vital biological and scientific context for the development and rigorous testing of novel drugs and therapeutic interventions. Millions of knockout mice are utilized annually in experimental settings worldwide.

Diverse Strains and Models

Thousands of Models

The scientific community has developed thousands of distinct strains of knockout mice, each characterized by the inactivation of a specific gene or set of genes.[3] Many of these models are named directly after the gene that has been targeted for inactivation.

The p53 Example

A notable example is the p53 knockout mouse. The p53 gene encodes a crucial protein that normally suppresses tumor growth by arresting cell division or inducing apoptosis. Humans with mutations deactivating the p53 gene often develop Li-Fraumeni syndrome, characterized by a significantly increased risk of early-onset cancers, including bone, breast, and blood cancers. While p53 gene inactivation in humans leads to specific tumor types, its absence in mice can result in tumors developing in a different array of tissues, highlighting the complexities of cross-species modeling.

Naming Conventions

Beyond gene-based nomenclature, mouse models are also named according to their observable physical characteristics or behavioral phenotypes, providing descriptive identifiers for these specialized research tools.

The Creation Procedure

Engineering the Knockout

The process of generating a knockout mouse is intricate, typically involving several key stages:

  1. Gene Isolation and Construct Design: The target gene is isolated from a mouse gene library. A synthetic DNA sequence, designed to be similar to the original gene but rendered inoperable, is engineered. This construct often includes a marker gene (e.g., conferring resistance to a toxic agent like neomycin) and a second selection gene (e.g., herpes tk+) to facilitate precise selection of successfully modified cells.
  2. Embryonic Stem Cell (ESC) Culture: Embryonic stem cells are harvested from early-stage mouse embryos (blastocysts) and cultured in vitro. For instance, stem cells from a white mouse strain might be used.
  3. DNA Introduction and Homologous Recombination: The engineered DNA construct is introduced into the ESCs, typically via electroporation. Through the cell's natural homologous recombination mechanism, some ESCs integrate the knockout construct into their chromosomes, replacing the original gene. This process is often inefficient, with many cells becoming heterozygous (carrying the knockout in only one chromosome).
  4. Selection of Modified Cells: A crucial step involves selecting cells that have undergone successful homologous recombination. This is achieved by culturing the cells in a medium containing agents like neomycin and ganciclovir. Cells with random DNA insertions or no integration are eliminated, leaving only those correctly modified.

Chimera Formation and Breeding

Continuing the process:

  1. Blastocyst Injection: The selected, gene-modified ESCs (e.g., from the white mouse) are injected into blastocysts derived from a different mouse strain (e.g., grey mouse). These composite blastocysts, containing both original and modified stem cells, are then implanted into a foster mother.
  2. Chimera Development: The resulting offspring are chimeras—individuals composed of cells from both the donor blastocyst and the injected ESCs. Their coat color often reflects this mosaicism (e.g., patches of white and grey fur).
  3. Germline Transmission: Chimeric mice with gonads derived from the modified stem cells are bred with wild-type mice. This step allows for the transmission of the knockout gene into the germline.
  4. Heterozygous and Homozygous Generation: Offspring inheriting the knockout gene are initially heterozygous. Further breeding of these heterozygous mice allows for the generation of homozygous knockout mice, which possess no functional copies of the targeted gene.

A detailed explanation of this procedure is available via resources from the Nobel Prize organization.

The process involves precise genetic engineering and careful breeding:

  1. Targeting Vector Construction: A DNA sequence targeting the specific gene is engineered. This sequence is designed to disrupt the gene's function and typically includes selectable marker genes (e.g., neomycin resistance) and counter-selectable markers (e.g., herpes simplex virus thymidine kinase, HSV-tk) to ensure accurate selection of modified cells.
  2. Electroporation into Embryonic Stem (ES) Cells: ES cells, derived from early mouse embryos (blastocysts), are exposed to the targeting vector. Electroporation creates temporary pores in the cell membranes, allowing the DNA construct to enter.
  3. Homologous Recombination: Within the ES cells, the introduced DNA sequence attempts to integrate into the genome via homologous recombination, replacing the endogenous gene with the engineered sequence. This is a relatively rare event.
  4. Selection and Screening: Cells are cultured under selective conditions. For example, exposure to neomycin kills cells that did not integrate the resistance gene, while ganciclovir kills cells that integrated the HSV-tk gene (often indicating random insertion rather than targeted recombination). Successfully targeted cells survive and proliferate.
  5. Blastocyst Injection: The selected ES cells are injected into blastocysts from a different mouse strain. These blastocysts are then transferred to the uterus of a surrogate mother.
  6. Chimera Production: The resulting pups are chimeras, meaning their tissues are derived from both the injected ES cells and the original blastocyst cells. This chimerism is often visible in coat color patterns.
  7. Germline Transmission: Chimeric mice that have the modified gene in their germ cells (sperm or eggs) are identified. These mice are then bred with wild-type mice.
  8. Generation of Heterozygotes: Offspring inheriting the modified gene from one parent are heterozygous knockouts.
  9. Generation of Homozygotes: Breeding of heterozygous mice produces homozygous knockout mice, which lack functional copies of the targeted gene in all cells.

Challenges and Limitations

Developmental Lethality

A significant limitation is that approximately 15% of gene knockouts result in developmental lethality, meaning the genetically altered embryos cannot survive to birth. This restricts studies to embryonic development and can obscure the gene's function in adult organisms. Conditional mutations are often employed to overcome this, allowing gene inactivation at a specific developmental stage or in adulthood.

Interpretation Complexities

Sometimes, knocking out a gene may not produce an observable change in the mouse, or the observed phenotype may differ from human conditions where the same gene is inactivated. For example, p53 gene mutations are linked to numerous human cancers, but p53 knockout mice develop tumors in different tissues than humans do, underscoring the need for careful interpretation and consideration of species-specific differences.

Genetic Background Effects

The genetic background of the mouse strain used can influence the phenotype. For instance, the commonly used 129 strain may not be ideal for behavioral studies. Furthermore, genes located near the targeted locus or complex genomic structures like repetitive sequences, DNA methylation, or heterochromatin can complicate the knockout process and interpretation (the "flanking-gene effect").

Developmental Masking

Conventional knockouts, where the gene is absent from conception, can mask its role in adult physiology if the gene is involved in multiple developmental processes. In such cases, conditional/inducible knockout approaches are necessary to ablate the gene's function specifically in adult animals, preserving normal development.

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References

References

A full list of references for this article are available at the Knockout mouse Wikipedia page

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